Journal Articles

  1. Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology.
  2. Phillips OR, Joshi SH, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck DW, Caltagirone C, Sabatini U, Di Paola M (2016) Major Superficial White Matter Abnormalities in Huntington disease Frontiers in Neuroscience, 10(0197)
  3. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D, Elifani F, Caltagirone C, Sabatini U, Di Paola M (2016) The Superficial White Matter in Alzheimer's Disease. Human Brain Mapping 37(4):1321–1334.
  4. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW, Leahy RM, Xue F, Houston SM, C Cheng, Q Dong, ZL Lu (2015) How age of acquisition influences brain architecture in bilinguals. Journal of Neurolinguistics, 36:35-55.
  5. Marusak HA, Furman DJ, Kuruvadi N, Shattuck DW, Joshi SH, Joshi AA, Etkin A, Thomason ME (2015) Amygdala responses to salient social cues vary with oxytocin receptor genotype in youthNeuropsychologia. 2015 Oct 15. pii: S0028-3932(15)30191-3.
  6. Marusak HA, Kuruvadi N, Vila AM, Shattuck DW, Joshi S, Joshi AA, Jella PK, Thomason ME (2015) Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood. European Child & Adolescent Psychiatry
  7. Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, and Leahy RM (2015) Co-registration and Distortion Correction of Diffusion and Anatomical Images Based on Inverse Contrast Normalization, NeuroImage 115:269-80
  8. Habibi A, Ilari B, Crimi K, Metke M, Kaplan JT, Joshi AA, Leahy RM, Shattuck DW, Choi SY, Ficek B, Haldar JP, Damasio A, Damasio H (2014) An Equal Start: Absence of Group Differences in Cognitive, Social and Neural Measures Prior to Music or Sports Training in Children.Frontiers in Human Neuroscience, 8(690)1:11.
  9. Toga AW, Clark KA, Thompson PM, Shattuck DW, Van Horn JD (2012) Mapping the Human Connectome Neurosurgery 71(1):1-5
  10. Toga AW, Dinov ID, Thompson PM, Woods RP, Van Horn JD, Shattuck DW, Parker DS (2012) The Center for Computational Biology: Resources, Achievements, and Challenges J Am Med Inform Assoc 19(2):202-6.
  11. Luders E, Sanchez FJ, Tosun D, Shattuck DW, Gaser CW, Vilain E, Toga AW (2012) Increased Cortical Thickness in Male-to-Female Transsexualism Journal of Behavioral and Brain Science 2(3):357-362.
  12. Joshi AA, Chaudhari JA, Li C, Dutta J, Cherry SR, Shattuck DW, Toga AW and Leahy RM (2010) DigiWarp: a method for deformable mouse atlas warping to surface topographic data Physics in Medicine and Biology 55(20):6197-214.
  13. Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Heriche J-K (2010) Visualization of image data from cells to organisms Nature Methods 7(3):S26-S41
  14. O'Donoghue SI, Gavin A-C, Gehlenborg N, Goodsell DS, Jean-Karim Heriche, Cydney B, Nielsen C, North C, Olson AJ, Procter JB, Shattuck DW, Walter T (2010) Visualizing biological data - now and in the future Nature Methods 7(3):S2-S4
  15. Tohka J, Dinov ID, Shattuck DW, and Arthur W. Toga (2010) Brain MRI Tissue Classification Based on Local Markov Random Fields Magnetic Resonance Imaging 2010 Jan 28
  16. Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck D, Toga A, Leahy RM (2010) Sulcal set optimization for cortical surface registration, NeuroImage, 2010 Jan 4.
  17. Pantazis D, Joshi AA, Jintao J, Shattuck DW, Bernstein LE, Damasio H, and Leahy RM (2010) Comparison of landmark-based and automatic methods for cortical surface registration, NeuroImage 49(3):2479-93
  18. Eckstein I, Shattuck DW, Stein JL, McMahon KL, de Zubicaray GI, Wright MJ, Thompson PM, and Toga AW (2009) Active Fibers: Matching Deformable Tract Templates to Diffusion Tensor Images, accepted January 2009 for publication in NeuroImage 47(Suppl 2):T82-9.
  19. Joshi AA, Shattuck DW, Thompson PM, and Leahy RM (accepted) A Parameterization-based Numerical Method for Isotropic and Anisotropic Diffusion Smoothing on Non-Flat Surfaces, accepted January 2009 for publication in IEEE Trans. on Image Processing 18(6):1358-1365.
  20. Hageman NS, Toga AW, Narr KL, Shattuck DW (2009) A Diffusion Tensor Imaging Tractography Algorithm Based on Navier-Stokes Fluid Mechanics IEEE Trans. on Medical Imaging 28(3):348-360
  21. Shattuck DW, Joshi AA, Pantazis D, Kan E, Dutton RA, Sowell ER, Thompson PM, Toga AW, Leahy RM (2009) Semi-automated Method for Delineation of Landmarks on Models of the Cerebral Cortex, Journal of Neuroscience Methods 178(2):385-392.
  22. Shattuck DW, Prasad G, Mirza M, Narr KL, and Toga AW (2009) Online Resource for Validation of Brain Segmentation Algorithms NeuroImage 45(2):431-439.         [SVE Website]
  23. Chiang MC, Barysheva M, Shattuck DW, Lee AD, Madsen S, Avedissian C, Klunder AD, Toga AW, McMahon KL, de Zubicaray GI, Wright MJ, Srivastava A, Balov N, and Thompson PM (2009) Genetics of Brain Fiber Architecture and Intellectual Performance Journal of Neuroscience 29(7):2212-2224.
  24. Narr KL, Hageman N, Woods RP, Hamilton LS, Clark K, Phillips O, Shattuck DW, Asarnow RF, Toga AW (2009) Mean diffusivity: A biomarker for CSF-related disease and genetic liability effects in schizophrenia Psychiatric Research: NeuroImaging 171(1):20-32.
  25. de Zubicaray G, Chiang MC, McMahon KL Shattuck DW, Toga AW, Martin NG, Wright MJ, and Thompson PM (2008) Meeting the challenges of neuroimaging genetics Brain Imaging and Behavior 2(4):258-263
  26. Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW (2008) Construction of a 3D Probabilistic Atlas of Human Brain Structures NeuroImage 39(3):1064-1080 PMCID: PMC2757616
  27. Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy (2007) Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings IEEE Trans. on Medical Imaging 26(12):1657-1669
  28. Tohka J, Krestyannikov E, Dinov ID, MacKenzie-Graham A, Shattuck DW, Ruotsalainen U, Toga AW (2007) Genetic Algorithms for Finite Mixture Model Based Voxel Classification in Neuroimaging, IEEE Trans. on Medical Imaging, 26(5):696-711. [PMID: 17518064]
  29. Sicotte NL, Giesser BS, Tandon V, Klutch R, Steiner B, Drain AE, Shattuck DW, Hull L, Wang HJ, Elashoff RM, Swerdloff RS, Voskuhl RR (2007) Testosterone Treatment in Multiple Sclerosis: A Pilot Study, Arch Neurol 64(5):683-8. [PMID: 17502467]
  30. MacKenzie-Graham A, Tinsley MR, Shaha KP, Aguilar C, Strickland LV, Boline J, Martin M, Morales L, Shattuck DW , Jacob RE, Voskuhl RR and Toga AW (2006) Cerebellar cortical atrophy in experimental autoimmune encephalomyelitis NeuroImage 32(3):1016-1023.
  31. Sicotte NL, Salamon G, Shattuck DW, Hageman N, Rub U, Salamon N, Drain AE, Demer JL, Engle EC, Alger JR, Baloh RW, Deller T, Jen JC. Diffusion tensor MRI shows abnormal brainstem crossing fibers associated with ROBO3 mutations. (2006) Neurology 67(3):519-21. PMCID: PMC1618874
  32. Dinov ID, Valentino D, Shin BC, Konstantinidis F, Hu G, MacKenzie-Graham A, Lee E-F, Shattuck D, Ma J, Schwartz C, and Toga AW (2006) LONI Visualization Environment Journal of Digital Imaging 19(2):148-158. [PMID: 16598642]
  33. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, the Morphometry BIRN, and Brown GG (2006) Quantitative Evaluation of Automated Skull-Stripping Methods Applied to Contemporary and Legacy Images: Effects of Diagnosis, Bias Correction, and Slice Location Human Brain Mapping 27(2):99-113 PMCID: PMC2757616
  34. Salamon N, Sicotte N, Mongkolwat P, Shattuck D, Salamon G (2005) The human cerebral cortex on MRI: value of the coronal plane Surg Radiol Anat 27(5):431-43
  35. Salamon N, Sicotte N, Alger J, Shattuck D, Perlman S, Sinha U, Schultze-Haakh H, Salamon G (2005) Analysis of the brain-stem white-matter tracts with diffusion tensor imaging Neuroradiology 47(12):895-902
  36. Dogdas B, Shattuck DW, and Leahy RM (2005) Segmentation of Skull and Scalp in 3D Human MRI Using Mathematical Morphology Human Brain Mapping26(4):273-85
  37. Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stolzner SE, Rottenberg DA & Toga AW (2004) A meta-algorithm for brain extraction in MRI, NeuroImage 23(2):625-637
  38. Jen JC, Chan WM, Bosley TM, Wan J, Carr JR, Rub U, Shattuck D, Salamon G, Kudo LC, Ou J, Lin DD, Salih MA, Kansu T, Al Dhalaan H, Al Zayed Z, MacDonald DB, Stigsby B, Plaitakis A, Dretakis EK, Gottlob I, Pieh C, Traboulsi EI, Wang Q, Wang L, Andrews C, Yamada K, Demer JL, Karim S, Alger JR, Geschwind DH, Deller T, Sicotte NL, Nelson SF, Baloh RW, Engle EC (2004) Mutations in a human ROBO gene disrupt hindbrain axon pathway crossing and morphogenesis. Science. 2004 Jun 4;304(5676):1509-13 PMCID: PMC1618874.
  39. MacKenzie-Graham A, Lee E-F, Dinov ID, Bota M, Shattuck DW, Ruffins S, Yuan H, Konstantinidis F, Pitiot A, Ding Y, Hu G, Jacobs RE, and Toga AW (2003) A multimodal, multidimensional atlas of the C57BL/6J mouse brain Journal of Anatomy 204(2):93-102
  40. MacKenzie-Graham A, Jones ES, Shattuck DW, Dinov ID, Bota M, and Toga AW (2003) The Informatics of a C57BL/6J Mouse Brain Atlas Neuroinformatics 1(4):397-410
  41. Asma E, Shattuck DW, Leahy RM (2003) Lossless Compression of Dynamic PET Data, IEEE Transactions on Nuclear Science 50(1):9-16.
  42. Shattuck DW, Rapela J, Asma E, Chatzioannou A, Qi J, Leahy RM. (2002) Internet2-based 3D PET image reconstruction using a PC cluster. Phys Med Biol47(15):2785-95
  43. Shattuck DW and Leahy RM (2002) BrainSuite: An Automated Cortical Surface Identification Tool Medical Image Analysis, 8(2):129-142.
  44. Shattuck DW and Leahy RM (2001) Graph Based Analysis and Correction of Cortical Volume Topology, IEEE Transactions on Medical Imaging, 20(11)1167-1177.
  45. Baillet S, Leahy RM, Singh M, Shattuck DW, J.C. Mosher, "Supplementary Motor Area Activation Preceding Voluntary Finger Movements as Evidenced by Magnetoencephalography and fMRI", International Journal of Bioelectromagnetism, 2001.
  46. Arnold JB, Liow J-S, Schaper KA, Stern JJ, Sled JG, Shattuck DW, Worth AJ, Cohen MS, Leahy RM, Mazziotta JC, and Rottenberg DA, "Qualitative and Quantitative Evaluation of Six Bias-Correction Algorithms," NeuroImage, Vol. 13, No. 5, May 2001, pp. 931-943.
  47. Shattuck DW, Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM, "Magnetic Resonance Image Tissue Classification Using a Partial Volume Model," NeuroImage, Vol. 13, No. 5, May 2001, pp. 856-876.