Journal Articles

  1. Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology.
  2. Phillips OR, Joshi SH, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck DW, Caltagirone C, Sabatini U, Di Paola M (2016) Major Superficial White Matter Abnormalities in Huntington disease Frontiers in Neuroscience, 10(0197)
  3. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D, Elifani F, Caltagirone C, Sabatini U, Di Paola M (2016) The Superficial White Matter in Alzheimer's Disease. Human Brain Mapping 37(4):1321–1334.
  4. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW, Leahy RM, Xue F, Houston SM, C Cheng, Q Dong, ZL Lu (2015) How age of acquisition influences brain architecture in bilinguals. Journal of Neurolinguistics, 36:35-55.
  5. Marusak HA, Furman DJ, Kuruvadi N, Shattuck DW, Joshi SH, Joshi AA, Etkin A, Thomason ME (2015) Amygdala responses to salient social cues vary with oxytocin receptor genotype in youthNeuropsychologia. 2015 Oct 15. pii: S0028-3932(15)30191-3.
  6. Marusak HA, Kuruvadi N, Vila AM, Shattuck DW, Joshi S, Joshi AA, Jella PK, Thomason ME (2015) Interactive effects of BDNF Val66Met genotype and trauma on limbic brain anatomy in childhood. European Child & Adolescent Psychiatry
  7. Bhushan C, Haldar JP, Choi S, Joshi AA, Shattuck DW, and Leahy RM (2015) Co-registration and Distortion Correction of Diffusion and Anatomical Images Based on Inverse Contrast Normalization, NeuroImage 115:269-80
  8. Habibi A, Ilari B, Crimi K, Metke M, Kaplan JT, Joshi AA, Leahy RM, Shattuck DW, Choi SY, Ficek B, Haldar JP, Damasio A, Damasio H (2014) An Equal Start: Absence of Group Differences in Cognitive, Social and Neural Measures Prior to Music or Sports Training in Children.Frontiers in Human Neuroscience, 8(690)1:11.
  9. Toga AW, Clark KA, Thompson PM, Shattuck DW, Van Horn JD (2012) Mapping the Human Connectome Neurosurgery 71(1):1-5
  10. Toga AW, Dinov ID, Thompson PM, Woods RP, Van Horn JD, Shattuck DW, Parker DS (2012) The Center for Computational Biology: Resources, Achievements, and Challenges J Am Med Inform Assoc 19(2):202-6.
  11. Luders E, Sanchez FJ, Tosun D, Shattuck DW, Gaser CW, Vilain E, Toga AW (2012) Increased Cortical Thickness in Male-to-Female Transsexualism Journal of Behavioral and Brain Science 2(3):357-362.
  12. Joshi AA, Chaudhari JA, Li C, Dutta J, Cherry SR, Shattuck DW, Toga AW and Leahy RM (2010) DigiWarp: a method for deformable mouse atlas warping to surface topographic data Physics in Medicine and Biology 55(20):6197-214.
  13. Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Heriche J-K (2010) Visualization of image data from cells to organisms Nature Methods 7(3):S26-S41
  14. O'Donoghue SI, Gavin A-C, Gehlenborg N, Goodsell DS, Jean-Karim Heriche, Cydney B, Nielsen C, North C, Olson AJ, Procter JB, Shattuck DW, Walter T (2010) Visualizing biological data - now and in the future Nature Methods 7(3):S2-S4
  15. Tohka J, Dinov ID, Shattuck DW, and Arthur W. Toga (2010) Brain MRI Tissue Classification Based on Local Markov Random Fields Magnetic Resonance Imaging 2010 Jan 28
  16. Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck D, Toga A, Leahy RM (2010) Sulcal set optimization for cortical surface registration, NeuroImage, 2010 Jan 4.
  17. Pantazis D, Joshi AA, Jintao J, Shattuck DW, Bernstein LE, Damasio H, and Leahy RM (2010) Comparison of landmark-based and automatic methods for cortical surface registration, NeuroImage 49(3):2479-93
  18. Eckstein I, Shattuck DW, Stein JL, McMahon KL, de Zubicaray GI, Wright MJ, Thompson PM, and Toga AW (2009) Active Fibers: Matching Deformable Tract Templates to Diffusion Tensor Images, accepted January 2009 for publication in NeuroImage 47(Suppl 2):T82-9.
  19. Joshi AA, Shattuck DW, Thompson PM, and Leahy RM (accepted) A Parameterization-based Numerical Method for Isotropic and Anisotropic Diffusion Smoothing on Non-Flat Surfaces, accepted January 2009 for publication in IEEE Trans. on Image Processing 18(6):1358-1365.
  20. Hageman NS, Toga AW, Narr KL, Shattuck DW (2009) A Diffusion Tensor Imaging Tractography Algorithm Based on Navier-Stokes Fluid Mechanics IEEE Trans. on Medical Imaging 28(3):348-360
  21. Shattuck DW, Joshi AA, Pantazis D, Kan E, Dutton RA, Sowell ER, Thompson PM, Toga AW, Leahy RM (2009) Semi-automated Method for Delineation of Landmarks on Models of the Cerebral Cortex, Journal of Neuroscience Methods 178(2):385-392.
  22. Shattuck DW, Prasad G, Mirza M, Narr KL, and Toga AW (2009) Online Resource for Validation of Brain Segmentation Algorithms NeuroImage 45(2):431-439.         [SVE Website]
  23. Chiang MC, Barysheva M, Shattuck DW, Lee AD, Madsen S, Avedissian C, Klunder AD, Toga AW, McMahon KL, de Zubicaray GI, Wright MJ, Srivastava A, Balov N, and Thompson PM (2009) Genetics of Brain Fiber Architecture and Intellectual Performance Journal of Neuroscience 29(7):2212-2224.
  24. Narr KL, Hageman N, Woods RP, Hamilton LS, Clark K, Phillips O, Shattuck DW, Asarnow RF, Toga AW (2009) Mean diffusivity: A biomarker for CSF-related disease and genetic liability effects in schizophrenia Psychiatric Research: NeuroImaging 171(1):20-32.
  25. de Zubicaray G, Chiang MC, McMahon KL Shattuck DW, Toga AW, Martin NG, Wright MJ, and Thompson PM (2008) Meeting the challenges of neuroimaging genetics Brain Imaging and Behavior 2(4):258-263
  26. Shattuck DW, Mirza M, Adisetiyo V, Hojatkashani C, Salamon G, Narr KL, Poldrack RA, Bilder RM, Toga AW (2008) Construction of a 3D Probabilistic Atlas of Human Brain Structures NeuroImage 39(3):1064-1080 PMCID: PMC2757616
  27. Joshi AA, Shattuck DW, Thompson PM, and Richard M. Leahy (2007) Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings IEEE Trans. on Medical Imaging 26(12):1657-1669
  28. Tohka J, Krestyannikov E, Dinov ID, MacKenzie-Graham A, Shattuck DW, Ruotsalainen U, Toga AW (2007) Genetic Algorithms for Finite Mixture Model Based Voxel Classification in Neuroimaging, IEEE Trans. on Medical Imaging, 26(5):696-711. [PMID: 17518064]
  29. Sicotte NL, Giesser BS, Tandon V, Klutch R, Steiner B, Drain AE, Shattuck DW, Hull L, Wang HJ, Elashoff RM, Swerdloff RS, Voskuhl RR (2007) Testosterone Treatment in Multiple Sclerosis: A Pilot Study, Arch Neurol 64(5):683-8. [PMID: 17502467]
  30. MacKenzie-Graham A, Tinsley MR, Shaha KP, Aguilar C, Strickland LV, Boline J, Martin M, Morales L, Shattuck DW , Jacob RE, Voskuhl RR and Toga AW (2006) Cerebellar cortical atrophy in experimental autoimmune encephalomyelitis NeuroImage 32(3):1016-1023.
  31. Sicotte NL, Salamon G, Shattuck DW, Hageman N, Rub U, Salamon N, Drain AE, Demer JL, Engle EC, Alger JR, Baloh RW, Deller T, Jen JC. Diffusion tensor MRI shows abnormal brainstem crossing fibers associated with ROBO3 mutations. (2006) Neurology 67(3):519-21. PMCID: PMC1618874
  32. Dinov ID, Valentino D, Shin BC, Konstantinidis F, Hu G, MacKenzie-Graham A, Lee E-F, Shattuck D, Ma J, Schwartz C, and Toga AW (2006) LONI Visualization Environment Journal of Digital Imaging 19(2):148-158. [PMID: 16598642]
  33. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, the Morphometry BIRN, and Brown GG (2006) Quantitative Evaluation of Automated Skull-Stripping Methods Applied to Contemporary and Legacy Images: Effects of Diagnosis, Bias Correction, and Slice Location Human Brain Mapping 27(2):99-113 PMCID: PMC2757616
  34. Salamon N, Sicotte N, Mongkolwat P, Shattuck D, Salamon G (2005) The human cerebral cortex on MRI: value of the coronal plane Surg Radiol Anat 27(5):431-43
  35. Salamon N, Sicotte N, Alger J, Shattuck D, Perlman S, Sinha U, Schultze-Haakh H, Salamon G (2005) Analysis of the brain-stem white-matter tracts with diffusion tensor imaging Neuroradiology 47(12):895-902
  36. Dogdas B, Shattuck DW, and Leahy RM (2005) Segmentation of Skull and Scalp in 3D Human MRI Using Mathematical Morphology Human Brain Mapping26(4):273-85
  37. Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stolzner SE, Rottenberg DA & Toga AW (2004) A meta-algorithm for brain extraction in MRI, NeuroImage 23(2):625-637
  38. Jen JC, Chan WM, Bosley TM, Wan J, Carr JR, Rub U, Shattuck D, Salamon G, Kudo LC, Ou J, Lin DD, Salih MA, Kansu T, Al Dhalaan H, Al Zayed Z, MacDonald DB, Stigsby B, Plaitakis A, Dretakis EK, Gottlob I, Pieh C, Traboulsi EI, Wang Q, Wang L, Andrews C, Yamada K, Demer JL, Karim S, Alger JR, Geschwind DH, Deller T, Sicotte NL, Nelson SF, Baloh RW, Engle EC (2004) Mutations in a human ROBO gene disrupt hindbrain axon pathway crossing and morphogenesis. Science. 2004 Jun 4;304(5676):1509-13 PMCID: PMC1618874.
  39. MacKenzie-Graham A, Lee E-F, Dinov ID, Bota M, Shattuck DW, Ruffins S, Yuan H, Konstantinidis F, Pitiot A, Ding Y, Hu G, Jacobs RE, and Toga AW (2003) A multimodal, multidimensional atlas of the C57BL/6J mouse brain Journal of Anatomy 204(2):93-102
  40. MacKenzie-Graham A, Jones ES, Shattuck DW, Dinov ID, Bota M, and Toga AW (2003) The Informatics of a C57BL/6J Mouse Brain Atlas Neuroinformatics 1(4):397-410
  41. Asma E, Shattuck DW, Leahy RM (2003) Lossless Compression of Dynamic PET Data, IEEE Transactions on Nuclear Science 50(1):9-16.
  42. Shattuck DW, Rapela J, Asma E, Chatzioannou A, Qi J, Leahy RM. (2002) Internet2-based 3D PET image reconstruction using a PC cluster. Phys Med Biol47(15):2785-95
  43. Shattuck DW and Leahy RM (2002) BrainSuite: An Automated Cortical Surface Identification Tool Medical Image Analysis, 8(2):129-142.
  44. Shattuck DW and Leahy RM (2001) Graph Based Analysis and Correction of Cortical Volume Topology, IEEE Transactions on Medical Imaging, 20(11)1167-1177.
  45. Baillet S, Leahy RM, Singh M, Shattuck DW, J.C. Mosher, "Supplementary Motor Area Activation Preceding Voluntary Finger Movements as Evidenced by Magnetoencephalography and fMRI", International Journal of Bioelectromagnetism, 2001.
  46. Arnold JB, Liow J-S, Schaper KA, Stern JJ, Sled JG, Shattuck DW, Worth AJ, Cohen MS, Leahy RM, Mazziotta JC, and Rottenberg DA, "Qualitative and Quantitative Evaluation of Six Bias-Correction Algorithms," NeuroImage, Vol. 13, No. 5, May 2001, pp. 931-943.
  47. Shattuck DW, Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM, "Magnetic Resonance Image Tissue Classification Using a Partial Volume Model," NeuroImage, Vol. 13, No. 5, May 2001, pp. 856-876.
  48. Conference Articles

    peer-reviewed

  49. Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW (accepted) "Correcting inhomogeneity-induced distortion in FMRI using non-rigid registration", IEEE International Symposium on Biomedicine (ISBI'15), Brooklyn, New York, April 2015.
  50. Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM (2013) Cortical Shape Analysis using the Anisotropic Global Point Signature, MFCA 2013: 4th MICCAI workshop on Mathematical Foundations of Computational Anatomy, Nagoya, Japan, September 2013.
  51. Joshi AA, Ashrafulla S, Shattuck DW, Damasio H, Leahy RM (2012) "An Invariant Shape Representation using Anisotropic Helmholtz Equation" Medical Image Computing and Computer Assisted Intervention (MICCAI) 2012, Nice, France, October 2012.
  52. Joshi AA, Shattuck DW, Leahy RM (2012) A Fast and Accurate Method for Automated Cortical Surface Registration and Labeling Fifth Workshop on Biomedical Image Registration, Nashville, Tennessee, July 2012.
  53. Joshi AA, Shattuck DW, Damasio H, Leahy RM (2012) "Geodesic Curvature Flow on Surfaces for Automatic Sulcal Delineation", IEEE International Symposium on Biomedicine (ISBI'12), Barcelona, May 2012.
  54. Wheland D, Joshi AA, McMahon K, Hansell N, Martin N, Wright M, Thompson PM, Shattuck DW, Leahy RM (2012) Robust Identification of Partial-Correlation Based Networks With Applications to Cortical Thickness Data, IEEE International Symposium on Biomedicine (ISBI'12), Barcelona, May 2012.
  55. Prasad G, Joshi A, Thompson P, Toga A, Shattuck D, Terzopoulos D (2011) Skull-stripping with deformable organisms, 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, 30 March -2 April 2011
  56. Joshi AA, Joshi S, Dinov ID, Shattuck DW, Leahy RM, Toga AW (2010) Anatomical structural network analysis of human brain using partial correlations of gray matter volumes, IEEE International Symposium on Biomedicine (ISBI'10), Rotterdam, June 2010.
  57. Joshi AA, Chaudhari AA, Shattuck DW, Dutta J, Leahy RM, and Toga AW (2009) Posture Matching and Elastic Registration of a Mouse Atlas to Surface Tomography Range Data, to appear at IEEE International Symposium on Biomedical Imaging (ISBI'09), Boston, June 2009.
  58. Hageman NS, Leow AD, Shattuck DW, Zhan L, Thompson PM, Zhu S, and Toga AW (2009) Segmenting crossing fiber geometries using fluid mechanics tensor distribution function tractography, IEEE International Symposium on Biomedical Imaging (ISBI'09), Boston, June 2009.
  59. Joshi AA, Leahy RM, Toga AW, and Shattuck DW (2009) A Unified Framework for Simultaneous Surface and Volumetric Brain Registration Information Processing in Medical Imaging, 21st International Conference, IPMI 2009, Williamsburg, Virginia
  60. Joshi AA, Pantazis D, Damasio H, Li Q, Shattuck DW, Bernstein LE and Leahy RM (2009) Optimization of Landmark Selection for Cortical Surface Registration, to appear at CVPR: Computer Vision and Pattern Recognition 2009, Miami Beach, FL, June 2009.
  61. Shattuck DW, Chiang MC, Barysheva M, McMahon KL, de Zubicaray GI, Meredith M, Wright MJ, Toga AW, Thompson PM (2008). Visualization Tools for High Angular Resolution Diffusion Imaging, Medical Image Computing and Computer Assisted Intervention (MICCAI) 2008, New York, NY 8 September 2008.
  62. Yanovsky I, Thompson P, Osher S, Hua X, Shattuck D, Toga A, Leow A (2008) Validating Unbiased Registration on Longitudinal MRI Scans from the Alzheimer's Disease Neuroimaging Initiative (ADNI). ISBI 2008.
  63. Joshi AA, Shattuck DW, Thompson PM, and Leahy RM (2007) Brain Image Registration using Cortically Constrained Harmonic Mappings, Information Processing in Medical Imaging, 20th International Conference, IPMI 2007, Kerkrade, The Netherlands, July 2-6, 2007, p. 359-371
  64. Joshi AA, Shattuck DW, Thompson PM, and Leahy RM (2007) A finite element method for elastic parameterization and alignment of cortical surfaces using sulcal constraints, 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007. (ISBI 2007). 12-15 April 2007 p. 640-643
  65. Joshi AA, Shattuck DW, Thompson PM, and Leahy RM (2007) Registration of cortical surfaces using sulcal landmarks for group analysis of MEG data, in D. Cheyne, B. Ross, G. Stroink and H. Weinberg (Eds.) International Congress Series Volume 1300, New Frontiers in Biomagnetism. Proceedings of the 15th International Conference on Biomagnetism, Vancouver, BC, Canada, August 21-25, 2006, p. 229-232.
  66. Hageman NS, Shattuck DW, Narr K, and Toga AW (2006) A diffusion tensor imaging tractography algorithm based on Navier-Stokes fluid mechanics, Proc. 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro in: J. Kovacevic' and E. Meijering (Eds.) Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2006), Arlington, VA, USA, 6-9 April 2006. p. 798-801
  67. Joshi A, Shattuck DW, Thompson PM, and Leahy RM (2005) A Framework for Registration, Statistical Characterization and Classification of Cortically Constrained Functional Data, in: G.E. Christensen and M. Sonka (Eds.): 19th International Conference on Information Processing in Medical Imaging (IPMI 2005), Glenwood Springs, CO, USA, July 10-15, 2005, p. 186-196
  68. Joshi A, Shattuck DW, Thompson PM, and Leahy RM (2004) Cortical Surface Parameterization by P-Harmonic Energy Minimization. in: R. Leahy and C. Roux (Eds.), Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2004), Arlington, VA, USA, 15-18 April 2004, p. 428-431
  69. Shattuck DW, MacKenzie-Graham A, and Toga AW (2004) DUFF: Software Tools for Visualization and Processing of Neuroimaging Data. in: R. Leahy and C. Roux (Eds.), Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2004), Arlington, VA, USA, 15-18 April 2004, p. 644-647
  70. Dogdas B, Shattuck DW & Leahy RM (2002) Segmentation of Patient Specific MEG/EEG Skull, Scalp, and Brain Models, MRI. 13th Intl. Conf. on Biomagnetism, Aug. 2002.
  71. Shattuck DW and Leahy RM "BrainSuite: An Automated Cortical Surface Identification Tool," in: S.L. Delp, A.M. DiGoia, and B. Jaramaz, (Eds.), Medical Image Computing and Computer-Assisted Intervention - MICCAI 2000, Lecture Notes in Computer Science, Vol. 1935, p. 51-61, Springer-Verlag, Berlin Heidelberg, 2000.
  72. Mosher JC, Leahy RM, Shattuck DW, and Baillet S, "MEG source imaging using multipolar expansions," pdf in: A. Kuba, M. Samal, and A. Todd-Pokropek (Eds.), 16th International Conference on Information Processing in Medical Imaging (IPMI'99), Lecture Notes in Computer Science, Vol. 1643, p. 15-28, Springer-Verlag, Berlin Heidelberg, 1999.